Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs880136 chr17:55186270 G/A 3.21E-7 404 14.23 15.43 5.97 KM Plot
STAD rs916733 chr7:155632315 C/T 8.98E-7 406 12.6 14.67 16.18 KM Plot
STAD rs924424 chr12:124765087 A/G 3.9E-5 406 15.22 13.6 11.77 KM Plot
STAD rs928439 chr1:196950482 G/A 5.96E-6 405 14.2 16.52 5.28 KM Plot
STAD rs928440 chr1:196950350 G/A 5.96E-6 405 14.2 16.52 5.28 KM Plot
STAD rs9427660 chr1:196946420 T/A 1.49E-5 402 14.13 16.52 5.28 KM Plot
STAD rs9427661 chr1:196946546 T/C 1.08E-5 406 14.13 16.52 5.28 KM Plot
STAD rs9427662 chr1:196946775 T/C 1.08E-5 406 14.13 16.52 5.28 KM Plot
STAD rs9427942 chr1:196946448 G/A 1.45E-5 403 14.07 16.52 5.28 KM Plot
STAD rs9811452 chr3:118481623 G/A 1.13E-5 405 14.13 17.92 2.7 KM Plot
STAD rs9830492 chr3:118490439 C/A 1.11E-5 405 14.13 17.92 2.7 KM Plot
STAD rs9855521 chr3:118500197 G/A 1.11E-5 405 14.13 17.92 2.7 KM Plot
STAD rs9904231 chr17:58209543 C/T 1.49E-9 401 13.97 18.7 3.03 KM Plot
STAD rs9905229 chr17:58209322 T/C 1.58E-9 400 14.02 18.7 3.03 KM Plot
STAD rs9907197 chr17:29018263 C/T 1.49E-5 405 14.2 16.53 9.8 KM Plot